Preprints (UI)
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109 rows where provider = "biohackrxiv" sorted by date_created descending
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- biohackrxiv · 109 ✖
| id | title | description | date_created ▲ | date_modified | date_published | original_publication_date | publication_doi | provider | is_published | reviews_state | version | is_latest_version | preprint_doi | license | tags_list | tags_data | contributors_list | contributors_data | first_author | subjects_list | subjects_data | download_url | has_coi | conflict_of_interest_statement | has_data_links | has_prereg_links | prereg_links | prereg_link_info | last_updated |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c8jw6_v1 | Persistence, metadata collection and re-architecture of BioHackrXiv | In this paper, we present the work executed on re-architecting BioHackrXiv during the international ELIXIR BioHackathon Europe 2023 in Barcelona, Spain. BioHack… | 2025-04-01T10:55:54.981234 | 2025-04-03T05:16:00.646444 | 2025-04-02T08:35:08.309125 | 2025-03-31T23:00:00 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/c8jw6_v1 | CC-By Attribution 4.0 International | biohackathon; biohackrxiv; codefest; preprints | ["biohackathon", "biohackrxiv", "codefest", "preprints"] | Arun Isaac; Yuhao Wang; Tazro Ohta; Leyla Jael Castro; Toshiaki Katayama; Pjotr Prins | [{"id": "4jfmk", "name": "Arun Isaac", "index": 0, "orcid": "0000-0002-6810-8195", "bibliographic": true}, {"id": "xvefb", "name": "Yuhao Wang", "index": 1, "or… | Arun Isaac | Life Sciences; Bioinformatics | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defcf46c7cdc67bcf54ef3", "text": "Bioinformatics"}] | https://osf.io/download/67ebc644c955b9e749b252f8 | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:18.571318 | |||
| 5uhwz_v2 | 2024 OME-NGFF workflows hackathon | The 2024 OME-NGFF Workflows Hackathon, held at the BioVisionCenter at the University of Zurich, brought together an international group of researchers and devel… | 2025-03-13T15:52:29.933088 | 2025-03-14T02:14:21.772524 | 2025-03-14T02:12:05.532132 | biohackrxiv | 1 | accepted | 2 | 1 | https://doi.org/10.37044/osf.io/5uhwz_v2 | CC-By Attribution 4.0 International | FAIR; NGFF; bioimaging; ome-zarr; workflows; zarr | ["FAIR", "NGFF", "bioimaging", "ome-zarr", "workflows", "zarr"] | Joel Lüthi; Marvin Albert; Liviu Anita; Kola Babalola; Davis Bennett; John A. Bogovic; Lorenzo Cerrone; Rémy Dornier; Jan Eglinger; Vera Galinova | [{"id": "6nsp3", "name": "Joel L\u00fcthi", "index": 0, "orcid": "0000-0003-3023-170X", "bibliographic": true}, {"id": "9dcq2", "name": "Marvin Albert", "index"… | Joel Lüthi | Physical Sciences and Mathematics; Life Sciences; Bioinformatics; Biology; Computer Sciences; Research Methods in Life Sciences | [{"id": "66defcee6c7cdc67bcf54ead", "text": "Physical Sciences and Mathematics"}, {"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defcf46… | https://osf.io/download/67d2ff4d86f2525b5800f0b1 | 1 | Many of the authors have been involved with the development of the OME-Zarr specification and tools in its ecosystem already before the hackathon. Norman Rzepka… | available | not_applicable | [] | 2025-04-09T21:06:19.330460 | |||
| 83apv_v1 | Simplifying and Standardizing the Creation of Data Use Agreements for Life Sciences and Beyond - BH Germany2024 | The primary goal of this project is to develop a web application for creating data usage agreements (DUA) in a way that allows automated evaluation of access pe… | 2025-03-10T09:06:18.052552 | 2025-03-11T08:45:23.300367 | 2025-03-11T08:33:33.750089 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/83apv_v1 | CC-By Attribution 4.0 International | ARC; DUA; ODRL; RO-Crate | ["ARC", "DUA", "ODRL", "RO-Crate"] | Manuel Feser; Sebastian Beyvers; Daniel Arend; Constantin Breß; Maria Hansen; Christian Henke; Stephan Lesch; Carmen Scheuner; Heinrich Lukas Weil | [{"id": "yg9br", "name": "Manuel Feser", "index": 0, "orcid": "0000-0001-6546-1818", "bibliographic": true}, {"id": "9kcem", "name": "Sebastian Beyvers", "index… | Manuel Feser | Life Sciences; Law | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defcee6c7cdc67bcf54eb5", "text": "Law"}] | https://osf.io/download/67ceab987ba0c3c918040c8c | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:23.665248 | ||||
| pzmue_v1 | Secure Processing Environments as a Service in the de.NBI Cloud | Sensitive human data is crucial for biomedical research, enabling faster drug development and better understanding of diseases. The Biohackathon Germany project… | 2025-03-07T14:30:30.113051 | 2025-03-11T09:24:01.867468 | 2025-03-11T09:15:42.207068 | 2025-03-06T23:00:00 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/pzmue_v1 | CC-By Attribution 4.0 International | GA4GH; LS Login; Secure Processing Environment; Task Execution Service (TES); Workflow Execution Service (WES) | ["GA4GH", "LS Login", "Secure Processing Environment", "Task Execution Service (TES)", "Workflow Execution Service (WES)"] | Martin Braun; Alexander Kanitz; Jan Krüger; Landfried Kraatz; Jacobo Miranda; Carsten Schelp; Valentin Schneider-Lunitz; Sanjay Kumar Srikakulam; Xaver Stiensme… | [{"id": "qe34m", "name": "Martin Braun", "index": 0, "orcid": null, "bibliographic": true}, {"id": "rzdg4", "name": "Alexander Kanitz", "index": 1, "orcid": nul… | Martin Braun | Life Sciences | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}] | https://osf.io/download/67cb032ed901de800ac9c1a6 | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:16.326583 | |||
| hbw6m_v1 | Development of FAIR image analysis workflows and training in Galaxy | Although image analysis tools are available within the Galaxy platform, they remain underutilised. During the 2023 BioHackathon Europe, our efforts focused on en… | 2025-03-07T14:29:53.326364 | 2025-03-13T01:18:01.029441 | 2025-03-13T01:09:40.720488 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/hbw6m_v1 | CC0 1.0 Universal | FAIR; Galaxy; image analysis; useGalaxy; workflows | ["FAIR", "Galaxy", "image analysis", "useGalaxy", "workflows"] | Leonid Kostrykin; Boris Depoortere; Diana Chiang; Sven Klumpe; Riccardo Massei; Matúš Kalaš; Anne Fouilloux; Beatriz Serrano-Solano | [{"id": "xzvhn", "name": "Leonid Kostrykin", "index": 0, "orcid": null, "bibliographic": true}, {"id": "pj4qk", "name": "Boris Depoortere", "index": 1, "orcid":… | Leonid Kostrykin | Physical Sciences and Mathematics; Life Sciences; Environmental Sciences; Earth Sciences | [{"id": "66defcee6c7cdc67bcf54ead", "text": "Physical Sciences and Mathematics"}, {"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defd0a6… | https://osf.io/download/67cb02f7b11192ea7ffd8d34 | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:24.009360 | ||||
| p9u42_v1 | BioHackEU24 report: ORCID and ROR identifiers in BioHackrXiv reports | The first BioHackrXiv preprint was published in 2020, using a platform based on the idea of using Markdown, and just weeks ago, BioHackrXiv published their 100t… | 2025-03-06T05:35:02.847151 | 2025-03-11T08:17:22.420386 | 2025-03-11T08:14:27.373296 | 2025-03-05T23:00:00 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/p9u42_v1 | CC-By Attribution 4.0 International | BioHackrXiv | ["BioHackrXiv"] | Egon Willighagen; Tazro Ohta | [{"id": "8s72v", "name": "Egon Willighagen", "index": 0, "orcid": "0000-0001-7542-0286", "bibliographic": true}, {"id": "edbh2", "name": "Tazro Ohta", "index": … | Egon Willighagen | Life Sciences | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}] | https://osf.io/download/67c936280d2fea4da5fd6e72 | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:14.464625 | |||
| m7xr6_v1 | Report: Workshop on connecting Knowledge Graphs with BioChatter | The workshop on connecting Knowledge Graphs (KGs) with BioChatter convened experts from biology, computer science, and bioinformatics to tackle challenges in in… | 2025-03-05T10:34:49.010611 | 2025-03-11T09:14:21.616170 | 2025-03-11T09:09:15.313349 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/m7xr6_v1 | CC-By Attribution 4.0 International | [] | Cyril Pommier; Sebastian Beier; Pedro Miguel Barros; Johann Confais; Nicolas Francillonne; Hugo Miguel Costa Rodrigues; Hiromi Kajiya-Kanegae; Ryokei Tanaka; Br… | [{"id": "8qy46", "name": "Cyril Pommier", "index": 0, "orcid": "0000-0002-9040-8733", "bibliographic": true}, {"id": "habky", "name": "Sebastian Beier", "index"… | Cyril Pommier | Physical Sciences and Mathematics; Life Sciences; Plant Sciences; Computer Sciences; Artificial Intelligence and Robotics; Databases and Information Systems | [{"id": "66defcee6c7cdc67bcf54ead", "text": "Physical Sciences and Mathematics"}, {"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defcef6… | https://osf.io/download/67c828d3600ab9e7d6bb380c | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:23.134979 | |||||
| 5uhwz_v1 | 2024 OME-NGFF workflows hackathon | The 2024 OME-NGFF Workflows Hackathon, held at the BioVisionCenter at the University of Zurich, brought together an international group of researchers and devel… | 2025-03-03T15:12:37.567239 | 2025-03-11T08:20:21.293972 | 2025-03-11T08:15:33.009850 | biohackrxiv | 1 | accepted | 1 | 0 | https://doi.org/10.37044/osf.io/5uhwz_v1 | CC-By Attribution 4.0 International | FAIR; NGFF; bioimaging; ome-zarr; workflows; zarr | ["FAIR", "NGFF", "bioimaging", "ome-zarr", "workflows", "zarr"] | Joel Lüthi; Marvin Albert; Liviu Anita; Kola Babalola; Davis Bennett; John A. Bogovic; Lorenzo Cerrone; Rémy Dornier; Jan Eglinger; Vera Galinova | [{"id": "6nsp3", "name": "Joel L\u00fcthi", "index": 0, "orcid": "0000-0003-3023-170X", "bibliographic": true}, {"id": "9dcq2", "name": "Marvin Albert", "index"… | Joel Lüthi | Physical Sciences and Mathematics; Life Sciences; Bioinformatics; Biology; Computer Sciences; Research Methods in Life Sciences | [{"id": "66defcee6c7cdc67bcf54ead", "text": "Physical Sciences and Mathematics"}, {"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defcf46… | https://osf.io/download/67c5c700fdb0164475f455bb | 1 | Many of the authors have been involved with the development of the OME-Zarr specification and tools in its ecosystem already before the hackathon. Norman Rzepka… | available | not_applicable | [] | 2025-04-09T21:06:21.719849 | |||
| gzyxq_v1 | BioHackGermany24 report: User-friendly ISA-based metadata annotation of life science experiments with ISA Wizard | As a contribution to BioHackathon Germany 2024, the following report details the work conducted during that event for project 8: User-friendly ISA-based metadat… | 2025-02-07T15:32:21.488764 | 2025-02-07T16:09:22.852835 | 2025-02-07T16:07:19.165626 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/gzyxq_v1 | CC-By Attribution 4.0 International | ENA; FAIR; ISA; MIAPPE; Research Data Management; svelte | ["ENA", "FAIR", "ISA", "MIAPPE", "Research Data Management", "svelte"] | Sebastian Beier; Patrick König | [{"id": "habky", "name": "Sebastian Beier", "index": 0, "orcid": "0000-0002-2177-8781", "bibliographic": true}, {"id": "2huzp", "name": "Patrick K\u00f6nig", "i… | Sebastian Beier | Life Sciences | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}] | https://osf.io/download/67a6279598502bfea0b38d71 | 0 | not_applicable | not_applicable | [] | 2025-04-09T21:06:21.359918 | ||||
| 5ue2s_v1 | BioHackJP24 report: Running a WikiBlitz | During BioHackathon 24 in Fukushima, we organized a WikiBlitz, a collaborative effort to integrate biodiversity observations from iNaturalist into the Wikimedia… | 2025-02-05T16:42:08.649628 | 2025-02-07T03:42:08.007110 | 2025-02-07T03:41:08.466576 | biohackrxiv | 1 | accepted | 1 | 1 | https://doi.org/10.37044/osf.io/5ue2s_v1 | CC-By Attribution 4.0 International | bioblitz; crowdsourcing; inaturalist; wikidata; wikipedia | ["bioblitz", "crowdsourcing", "inaturalist", "wikidata", "wikipedia"] | Andra Waagmeester; Yasunori Yamamoto; Shuya Ikeda; Núria Queralt Rosinach; Erick Antezana; Julia Koblitz | [{"id": "4gq5j", "name": "Andra Waagmeester", "index": 0, "orcid": "0000-0001-9773-4008", "bibliographic": true}, {"id": "a5w98", "name": "Yasunori Yamamoto", "… | Andra Waagmeester | Life Sciences; Biology; Biodiversity; Research Methods in Life Sciences | [{"id": "66defcee6c7cdc67bcf54eb0", "text": "Life Sciences"}, {"id": "66defd0b6c7cdc67bcf55002", "text": "Biology"}, {"id": "66defd186c7cdc67bcf550c5", "text": … | https://osf.io/download/67a3974a67017f92b30c5772 | 0 | available | not_applicable | [] | 2025-04-09T21:06:19.344020 |
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CREATE TABLE [preprints_ui] ( [id] TEXT PRIMARY KEY, [title] TEXT, [description] TEXT, [date_created] TEXT, [date_modified] TEXT, [date_published] TEXT, [original_publication_date] TEXT, [publication_doi] TEXT, [provider] TEXT, [is_published] INTEGER, [reviews_state] TEXT, [version] INTEGER, [is_latest_version] INTEGER, [preprint_doi] TEXT, [license] TEXT, [tags_list] TEXT, [tags_data] TEXT, [contributors_list] TEXT, [contributors_data] TEXT, [first_author] TEXT, [subjects_list] TEXT, [subjects_data] TEXT, [download_url] TEXT, [has_coi] INTEGER, [conflict_of_interest_statement] TEXT, [has_data_links] TEXT, [has_prereg_links] TEXT, [prereg_links] TEXT, [prereg_link_info] TEXT, [last_updated] TEXT ); CREATE INDEX idx_preprints_ui_date ON preprints_ui(date_created); CREATE INDEX idx_preprints_ui_provider ON preprints_ui(provider);